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Example clinical scenario

A female patient, with unrelated parents and an absent family history, first presented aged 17 with nephrocalcinosis but normocalcaemia. Now, at the age of 25, she presents in pregnancy with severe hypercalcaemia. PTH levels are low. Clinical examination and blood pressure measurement are normal. Laboratory tests show elevated adjusted calcium, elevated 25(OH)D and 1,25(OH) vitamin D, and immeasurably low 24,25 (OH) vitamin D.

When to consider genomic testing

  • You should consider genomic testing when:
    • there are elevated calcium and vitamin D metabolites, particularly in conjunction with nephrocalcinosis and/or nephrolithiasis; and/or
    • there is a history of nephrolithiasis or nephrocalcinosis in siblings.
  • Other causes of hypercalcuric hypercalcaemia, such as vitamin D toxicity and granulomatous disease, should be considered before organising genomic testing.

What do you need to do?

  • Consult the National Genomic Test Directory. From here you can access the rare and inherited disease eligibility criteria for information about individual tests and their associated eligibility criteria. You can also access a spreadsheet of all available tests.
  • For information about the genes that are included on different gene panels, see the NHS Genomic Medicine Service (GMS) Signed Off Panels Resource.
  • Decide which of the tests best suits the needs of your patient/family. For patients with nephrocalcinosis or nephrolithiasis, there are a number of options, including:
  • None of the tests outlined above use whole genome sequencing (WGS), so you should use your local Genomic Laboratory Hub test order form and consent (record of discussion) forms.
  • Note that different forms are required for any test involving WGS.
  • Most tests are DNA based, and an EDTA sample (typically a purple-topped tube) is required. There are a few tests for which a different type of tube is used; see Samples for genomic testing in rare disease.
  • If you are discussing genomics concepts with your patients, you may find it helpful to use the visual communication aids for genomics conversations.
  • Information about patient eligibility and test indications were correct at the time of writing. When requesting a test, please refer to the National Genomic Test Directory to confirm the right test for your patient.
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  • Last reviewed: 19/01/2026
  • Next review due: 19/01/2027
  • Authors: Dr Joanna Jarvis
  • Reviewers: Dr Danielle Bogue, Professor Richard Sandford, Professor John A Sayer